# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "geiger" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'geiger: Analysis of Evolutionary Diversification'
version: 2.0.12
doi: 10.1073/pnas.0811087106
identifiers:
- type: doi
  value: 10.32614/CRAN.package.geiger
abstract: Methods for fitting macroevolutionary models to phylogenetic trees Pennell
  (2014) <https://doi.org/10.1093/bioinformatics/btu181>.
authors:
- family-names: Harmon
  given-names: Luke
  email: lukeh@uidaho.edu
- family-names: Pennell
  given-names: Matthew
- family-names: Brock
  given-names: Chad
- family-names: Brown
  given-names: Joseph
- family-names: Challenger
  given-names: Wendell
- family-names: Eastman
  given-names: Jon
- family-names: FitzJohn
  given-names: Rich
- family-names: Glor
  given-names: Rich
- family-names: Hunt
  given-names: Gene
- family-names: Revell
  given-names: Liam
- family-names: Slater
  given-names: Graham
- family-names: Uyeda
  given-names: Josef
- family-names: Weir
  given-names: Jason
preferred-citation:
  type: article
  title: Nine exceptional radiations plus high turnover explain species diversity
    in jawed vertebrates
  authors:
  - family-names: Alfaro
    given-names: M. E.
  - family-names: Santini
    given-names: F.
  - family-names: Brock
    given-names: C.
  - family-names: Alamillo
    given-names: H.
  - family-names: Dornburg
    given-names: A.
  - family-names: Rabosky
    given-names: D. L.
  - family-names: Carnevale
    given-names: G.
  - family-names: Harmon
    given-names: L. J.
  journal: PNAS
  year: '2009'
  volume: '106'
  doi: 10.1073/pnas.0811087106
  start: 13410-13414
repository: https://mwpennell.r-universe.dev
repository-code: https://github.com/mwpennell/geiger-v2
commit: 969d3212a8edd6a0b89767671662020adb129049
url: https://github.com/mwpennell/geiger-v2
date-released: '2026-08-31'
contact:
- family-names: Harmon
  given-names: Luke
  email: lukeh@uidaho.edu
references:
- type: article
  title: A novel comparative method for identifying shifts in the rate of character
    evolution on trees
  authors:
  - family-names: Eastman
    given-names: J. M.
  - family-names: Alfaro
    given-names: M. E
  - family-names: Joyce
    given-names: P.
  - family-names: Hipp
    given-names: A. L.
  - family-names: Harmon
    given-names: L. J.
  journal: Evolution
  year: '2011'
  volume: '65'
  doi: 10.1111/j.1558-5646.2011.01401.x
  start: 3578-3589
- type: article
  title: Fitting models of continuous trait evolution to incompletely sampled comparative
    data using approximate Bayesian computation
  authors:
  - family-names: Slater
    given-names: G. J.
  - family-names: Harmon
    given-names: L. J.
  - family-names: Wegmann
    given-names: D.
  - family-names: Joyce
    given-names: P
  - family-names: Revell
    given-names: L. J.
  - family-names: Alfaro
    given-names: M. E.
  journal: Evolution
  year: '2012'
  volume: '66'
  doi: 10.1111/j.1558-5646.2011.01474.x
  start: 752-762
- type: article
  title: 'GEIGER: investigating evolutionary radiations'
  authors:
  - family-names: Harmon
    given-names: L. J.
  - family-names: Weir
    given-names: J. T.
  - family-names: Brock
    given-names: C. D.
  - family-names: Glor
    given-names: R. E.
  - family-names: Challenger
    given-names: W.
  journal: Bioinformatics
  year: '2008'
  volume: '24'
  doi: 10.1093/bioinformatics/btm538
  start: 129-131
- type: article
  title: 'geiger v2.0: an expanded suite of methods for fitting macroevolutionary
    models to phylogenetic trees'
  authors:
  - family-names: Pennell
    given-names: M. W.
  - family-names: Eastman
    given-names: J. M.
  - family-names: Slater
    given-names: G. J.
  - family-names: Brown
    given-names: J. W.
  - family-names: Uyeda
    given-names: J. C.
  - family-names: Fitzjohn
    given-names: R. G.
  - family-names: Alfaro
    given-names: M. E.
  - family-names: Harmon
    given-names: L. J.
  journal: Bioinformatics
  year: '2014'
  volume: '30'
  doi: 10.1093/bioinformatics/btu181
  start: 2216-2218